A B C D E F G H I K L M N O P R S T U V

P

parameterFileName - Static variable in class CONDR

parseArguments(String[]) - Static method in class CONDR

Parses arguments to program

parseArguments(String[]) - Static method in class ConvertToExonFormat

Parses arguments to program

parseArguments(String[]) - Static method in class CreateExonFile

parseArguments(String[]) - Static method in class PileupToExon

parseArguments(String[]) - Static method in class SimulateExonMeasurements

Pileup - Class in <Unnamed>

Class to handle pileup files

Pileup(String) - Constructor for class Pileup

pileupFileName - Static variable in class PileupToExon

PileupToExon - Class in <Unnamed>

PileupToExon() - Constructor for class PileupToExon

posEnd - Variable in class CNV

position - Variable in class Pileup

posLeft - Variable in class Exon

posRight - Variable in class Exon

posStart - Variable in class CNV

printTimingMetrics - Static variable in class CONDR

printTimingMetrics - Static variable in class ConvertToExonFormat

printTimingMetrics - Static variable in class CreateExonFile

printTimingMetrics - Static variable in class PileupToExon

Probability - Class in <Unnamed>

Class to abstract away some of the probability computations (so it can be done in log space or normal space)

Probability(double) - Constructor for class Probability

pValue - Variable in class Exon