Class CreateExonFile

java.lang.Object
  CreateExonFile

public class CreateExonFile
extends java.lang.Object

Field Summary

(package private) static java.util.ArrayList<java.lang.Integer>	chromosomes
(package private) static java.lang.String	exonFileName
(package private) static java.util.ArrayList<Exon>	Exons
(package private) static java.lang.String	expressionFileName
(package private) static java.lang.String	mappedReadsFileName
(package private) static java.lang.String	outputFileName
(package private) static boolean	printTimingMetrics
(package private) static java.lang.String	referenceDirectory
(package private) static boolean	usingPileup

Constructor Summary

CreateExonFile()

Method Summary

static void	main(java.lang.String[] args)
private static void	parseArguments(java.lang.String[] arguments)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

Exons

static java.util.ArrayList<Exon> Exons

exonFileName

static java.lang.String exonFileName

expressionFileName

static java.lang.String expressionFileName

mappedReadsFileName

static java.lang.String mappedReadsFileName

referenceDirectory

static java.lang.String referenceDirectory

outputFileName

static java.lang.String outputFileName

chromosomes

static java.util.ArrayList<java.lang.Integer> chromosomes

printTimingMetrics

static boolean printTimingMetrics

usingPileup

static boolean usingPileup

Constructor Detail

CreateExonFile

public CreateExonFile()

Method Detail

main

public static void main(java.lang.String[] args)

parseArguments

private static void parseArguments(java.lang.String[] arguments)