Class PileupToExon

java.lang.Object
  PileupToExon

public class PileupToExon
extends java.lang.Object

Field Summary

(package private) static java.util.ArrayList<java.lang.Integer>	chromosomes
(package private) static java.lang.String	exonCaptureArrayFileName
(package private) static java.util.ArrayList<Exon>	Exons
(package private) static java.lang.String	outputFileName
(package private) static java.lang.String	pileupFileName
(package private) static boolean	printTimingMetrics
(package private) static boolean	usingPileup

Constructor Summary

PileupToExon()

Method Summary

static void	main(java.lang.String[] args)
private static void	parseArguments(java.lang.String[] arguments)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

Exons

static java.util.ArrayList<Exon> Exons

exonCaptureArrayFileName

static java.lang.String exonCaptureArrayFileName

pileupFileName

static java.lang.String pileupFileName

outputFileName

static java.lang.String outputFileName

chromosomes

static java.util.ArrayList<java.lang.Integer> chromosomes

printTimingMetrics

static boolean printTimingMetrics

usingPileup

static boolean usingPileup

Constructor Detail

PileupToExon

public PileupToExon()

Method Detail

main

public static void main(java.lang.String[] args)

parseArguments

private static void parseArguments(java.lang.String[] arguments)