A B C D E F G H I K L M N O P R S T U V

S

SimulateExonMeasurements - Class in <Unnamed>

SimulateExonMeasurements() - Constructor for class SimulateExonMeasurements

SimulateRegion(ArrayList<Exon>, ArrayList<Exon>, String, int) - Static method in class SimulateExonMeasurements

SNPPositions - Variable in class Exon

snpRatio - Variable in class State

SNPs - Variable in class Exon

sort(ArrayList<MappedReads>) - Static method in class MappedReads

sortExons(ArrayList<Exon>) - Static method in class Exon

Sort exons in order of their genomic position

startPosition - Variable in class MappedReads

state - Variable in class CNV

state - Variable in class Exon

State - Class in <Unnamed>

Holds the state name and the associated ratios expected

State() - Constructor for class State

stateName - Variable in class State

States - Static variable in class HiddenMarkovModel

StdDeviations - Static variable in class CONDR