Class MappedReads

java.lang.Object
  MappedReads

public class MappedReads
extends java.lang.Object

Field Summary

(package private) java.lang.Integer	chr
(package private) java.lang.Integer	coverage
(package private) java.lang.String	read
(package private) java.lang.Integer	startPosition

Constructor Summary

MappedReads(java.lang.String line)

Method Summary

static java.util.ArrayList<MappedReads>	readMappedReads(java.lang.String mappedReadsFileName, int chromosome)
static void	sort(java.util.ArrayList<MappedReads> data)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

chr

java.lang.Integer chr

startPosition

java.lang.Integer startPosition

read

java.lang.String read

coverage

java.lang.Integer coverage

Constructor Detail

MappedReads

MappedReads(java.lang.String line)

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

readMappedReads

public static java.util.ArrayList<MappedReads> readMappedReads(java.lang.String mappedReadsFileName,
                                                               int chromosome)

sort

public static void sort(java.util.ArrayList<MappedReads> data)