Uses of Class
MappedReads

Uses of MappedReads in <Unnamed>

Fields in <Unnamed> with type parameters of type MappedReads

(package private) java.util.ArrayList<MappedReads>

Exon.reads

Methods in <Unnamed> that return types with arguments of type MappedReads

static java.util.ArrayList<MappedReads>

MappedReads.readMappedReads(java.lang.String mappedReadsFileName, int chromosome)

Methods in <Unnamed> with parameters of type MappedReads

private static void	Exon.calculateSNPPositions(Exon exon, MappedReads read) Calculated the positions of the SNPs
private boolean	Exon.overlaps(MappedReads mappedRead) Does exon (this) overlap with mapped reads?

Method parameters in <Unnamed> with type arguments of type MappedReads

static void	Exon.getSNPs(java.util.ArrayList<Exon> exons, java.util.ArrayList<MappedReads> mappedReads) Gets the number of SNPs per exon
static void	MappedReads.sort(java.util.ArrayList<MappedReads> data)