CBMF 4761 Computational Genomics Final Projects, Spring 2003

• "Statistical Significance of Spectrum Kernel Scores for Protein Classification". Ho-Cheung Li, Eugene Ie
• "Can Support Vector Machines Extract Predictive Power from Single Nucleotide Polymorphisms?". Hui Nar Quek, Trevor Cohen, Chani Weinreb
• "Application of SVM to Inference from Single Nucleotide Polymorphism Data". Iuliana Ionita
• "Identification of potential cis-regulatory elements affecting translation initiation". Barrett C. Foat, Theodore L. Willke, Charles Lewis
• "A C++ Approach to Analyzing Time Series Gene Expression Data". Shira Katseff, Eric Li, Jonathan Liu, John Rolston
• "Human and Mouse Chromosome Sequence Alignment". Justin Lu, Dixon Koesdjojo
• "Implementation of 'Remote Homology Detection: A Motif Based Approach' with a trie-based method". Tuhin Ray, Rex Jan
• "Feature Selection with Exponential Model for Classification on Diffuse Large B-Cell Lymphoma". Winston H.-M Hsu, Weiwei Fortino, Zhenyu Peng
• "Use of Graphical Models to Determine Regulatory Networks". Joseph Aghion, Mahira Siddiqi, Art Sedighi, William Johnston
• "Bayesian Networks in the Analysis of Expression Data". Michael Halas, Rebecca M Gott, Vimal M Kapadia
• "Using Bayesian Networks to Predict Lactose and Tryptophan Networks in E. Coli". Ivan Iossifov, Murat Cokol
• "Inferring regulatory networks from perturbed expression profiles using HeLa data set". Aparna Mohla, Chris Chavis, Shilpa Krishnappa, Shameek Prasad Biswas, Corey Hung Wang
• "Correlation between cell cycle regulated gene expression level with upstream promoter sequences in yeast Saccharomyces cerevisiae". David Hefter, Kabir Ahuja, Shopon Mollah
• "Identification and Analysis of Processed Pseudogenes in the Human Genome using Computational Methods". Sachin Nene, Seema Gupta, Julian Maller, Miqdad Mohammed
• "Haplo-Genie: Automating Phylogenetic Analysis of Haplotype Data". Christy Lauridsen, Rostislav Briskin, Daniel Terry
• "Single Nucleotide Polymorphisms". Andrew Brotzman, Vijay Dewan
• "Using Agglomerative Information Bottleneck method to find genes useful for classifying tissue samples". Howard Chu, Shan Chen, Meena George
• "Analysis of Phylogenetic Trees of Several Species Based on 6 Methyltransferase Genes". Christopher Pendleton, Joya Zuber, Scott Price
• "Gene clustering by Promoter Patterns". Ivan Cedano, Jerin Kurian
• "A Discriminative Framework for Protein Local Structure Prediction". Rui Kuang, Dong Lou, Xiaohong Zhang
• "Hidden Markov Model for Conformation State Prediction". Linda Dai
• "Linear Modeling on Microarray Gene Expression Experiments with Factorial Design". Qinghong Li, Pi-Chun Chu